J5_4V4G_041

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CACUC*GAGGCAG

Length

27 nucleotides

Bulged bases

4V4G|1|EA|A|109, 4V4G|1|EA|A|349, 4V4G|1|EA|G|350, 4V4G|1|EA|C|352, 4V4G|1|EA|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|EA|C|58
4V4G|1|EA|A|59
4V4G|1|EA|A|60
4V4G|1|EA|G|61
*
4V4G|1|EA|C|106
4V4G|1|EA|G|107
4V4G|1|EA|G|108
4V4G|1|EA|A|109
4V4G|1|EA|C|110
4V4G|1|EA|G|111
4V4G|1|EA|G|112
4V4G|1|EA|G|113
*
4V4G|1|EA|C|314
4V4G|1|EA|A|315
4V4G|1|EA|G|316
*
4V4G|1|EA|C|337
4V4G|1|EA|A|338
4V4G|1|EA|C|339
4V4G|1|EA|U|340
4V4G|1|EA|C|341
*
4V4G|1|EA|G|348
4V4G|1|EA|A|349
4V4G|1|EA|G|350
4V4G|1|EA|G|351
4V4G|1|EA|C|352
4V4G|1|EA|A|353
4V4G|1|EA|G|354

Current chains

Chain EA

16S ribosomal RNA

Nearby chains

Chain EP

30S ribosomal protein S16

Chain ET

30S ribosomal protein S20

Chain FL

50S ribosomal protein L14