J5_4V4H_003
3D structure
- PDB id
- 4V4H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4V4H|1|AA|A|109, 4V4H|1|AA|C|352, 4V4H|1|AA|A|353
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V4H_003 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0881
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V4H|1|AA|C|58
4V4H|1|AA|A|59
4V4H|1|AA|A|60
4V4H|1|AA|G|61
*
4V4H|1|AA|C|106
4V4H|1|AA|G|107
4V4H|1|AA|G|108
4V4H|1|AA|A|109
4V4H|1|AA|C|110
4V4H|1|AA|G|111
4V4H|1|AA|G|112
4V4H|1|AA|G|113
*
4V4H|1|AA|C|314
4V4H|1|AA|A|315
4V4H|1|AA|C|316
*
4V4H|1|AA|G|337
4V4H|1|AA|A|338
4V4H|1|AA|C|339
*
4V4H|1|AA|G|350
4V4H|1|AA|G|351
4V4H|1|AA|C|352
4V4H|1|AA|A|353
4V4H|1|AA|G|354
Current chains
- Chain AA
- 16S RIBOSOMAL RNA
Nearby chains
- Chain AP
- 30S RIBOSOMAL PROTEIN S16
- Chain AT
- 30S RIBOSOMAL PROTEIN S20
- Chain BK
- 50S RIBOSOMAL PROTEIN L14
Coloring options: