J5_4V4H_011
3D structure
- PDB id
- 4V4H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.46 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V4H_011 not in the Motif Atlas
- Homologous match to J5_5J7L_002
- Geometric discrepancy: 0.0943
- The information below is about J5_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_67416.1
- Basepair signature
- cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V4H|1|CA|C|36
4V4H|1|CA|U|37
4V4H|1|CA|G|38
4V4H|1|CA|G|39
*
4V4H|1|CA|C|403
4V4H|1|CA|G|404
4V4H|1|CA|U|405
4V4H|1|CA|G|406
*
4V4H|1|CA|C|436
4V4H|1|CA|U|437
4V4H|1|CA|U|438
4V4H|1|CA|U|439
4V4H|1|CA|C|440
4V4H|1|CA|A|441
4V4H|1|CA|G|442
*
4V4H|1|CA|C|492
4V4H|1|CA|A|493
4V4H|1|CA|G|494
4V4H|1|CA|A|495
4V4H|1|CA|A|496
4V4H|1|CA|G|497
4V4H|1|CA|A|498
4V4H|1|CA|A|499
4V4H|1|CA|G|500
*
4V4H|1|CA|C|545
4V4H|1|CA|A|546
4V4H|1|CA|A|547
4V4H|1|CA|G|548
Current chains
- Chain CA
- 16S RIBOSOMAL RNA
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BH
- 50S RIBOSOMAL PROTEIN L9
- Chain CD
- 30S RIBOSOMAL PROTEIN S4
- Chain CL
- 30S RIBOSOMAL PROTEIN S12
Coloring options: