J5_4V4H_013

3D structure

PDB id

4V4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with the antibiotic kasugamyin at 3.5A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V4H|1|DB|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V4H_013 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0781

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V4H|1|DB|C|47
4V4H|1|DB|G|48
4V4H|1|DB|A|49
4V4H|1|DB|U|50
4V4H|1|DB|G|51
4V4H|1|DB|A|52
4V4H|1|DB|A|53
4V4H|1|DB|G|54
*
4V4H|1|DB|C|116
4V4H|1|DB|G|117
4V4H|1|DB|A|118
4V4H|1|DB|A|119
4V4H|1|DB|U|120
4V4H|1|DB|G|121
*
4V4H|1|DB|C|130
4V4H|1|DB|A|131
*
4V4H|1|DB|U|148
4V4H|1|DB|A|149
4V4H|1|DB|U|150
*
4V4H|1|DB|A|176
4V4H|1|DB|G|177
4V4H|1|DB|G|178

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain D2

50S RIBOSOMAL PROTEIN L34