J5_4V4Q_013

3D structure

PDB id

4V4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V4Q|1|DB|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V4Q_013 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0792

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V4Q|1|DB|C|47
4V4Q|1|DB|G|48
4V4Q|1|DB|A|49
4V4Q|1|DB|U|50
4V4Q|1|DB|G|51
4V4Q|1|DB|A|52
4V4Q|1|DB|A|53
4V4Q|1|DB|G|54
*
4V4Q|1|DB|C|116
4V4Q|1|DB|G|117
4V4Q|1|DB|A|118
4V4Q|1|DB|A|119
4V4Q|1|DB|U|120
4V4Q|1|DB|G|121
*
4V4Q|1|DB|C|130
4V4Q|1|DB|A|131
*
4V4Q|1|DB|U|148
4V4Q|1|DB|A|149
4V4Q|1|DB|U|150
*
4V4Q|1|DB|A|176
4V4Q|1|DB|G|177
4V4Q|1|DB|G|178

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L34