J5_4V4T_005

3D structure

PDB id

4V4T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex with a stop codon in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

6.46 Å

Loop

Sequence

GCAAGUUGGCC*GGUG*CC*GUGAACAGG*CGC

Length

29 nucleotides

Bulged bases

4V4T|1|BA|G|1758, 4V4T|1|BA|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4T|1|BA|G|1674
4V4T|1|BA|C|1675
4V4T|1|BA|A|1676
4V4T|1|BA|A|1677
4V4T|1|BA|G|1678
4V4T|1|BA|U|1679
4V4T|1|BA|U|1680
4V4T|1|BA|G|1681
4V4T|1|BA|G|1682
4V4T|1|BA|C|1683
4V4T|1|BA|C|1684
*
4V4T|1|BA|G|1704
4V4T|1|BA|G|1705
4V4T|1|BA|U|1706
4V4T|1|BA|G|1707
*
4V4T|1|BA|C|1751
4V4T|1|BA|C|1752
*
4V4T|1|BA|G|1756
4V4T|1|BA|U|1757
4V4T|1|BA|G|1758
4V4T|1|BA|A|1759
4V4T|1|BA|A|1760
4V4T|1|BA|C|1761
4V4T|1|BA|A|1762
4V4T|1|BA|G|1763
4V4T|1|BA|G|1764
*
4V4T|1|BA|C|1988
4V4T|1|BA|G|1989
4V4T|1|BA|C|1990

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L14

Chain BT

50S ribosomal protein L19