Loop J5_4V4T

3D structure

PDB id: 4V4T (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of the whole ribosomal complex with a stop codon in the A-site.
Experimental method: X-RAY DIFFRACTION
Resolution: 6.46 Å

Loop

Sequence: CUAAACC*GGGGUCGUGGGGCCCU*AGGGUACCCGAGUAC*GGAAUCUG*UAAG
Length: 50 nucleotides
Bulged bases: 4V4T|1|BA|A|270|||B, 4V4T|1|BA|U|270|||Z, 4V4T|1|BA|U|405
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V4T|1|BA|C|268
4V4T|1|BA|U|269
4V4T|1|BA|A|270
4V4T|1|BA|A|270|||A
4V4T|1|BA|A|270|||B
4V4T|1|BA|C|270|||C
4V4T|1|BA|C|270|||D
*
4V4T|1|BA|G|270|||V
4V4T|1|BA|G|270|||W
4V4T|1|BA|G|270|||X
4V4T|1|BA|G|270|||Y
4V4T|1|BA|U|270|||Z
4V4T|1|BA|C|271|||A
4V4T|1|BA|G|271|||B
4V4T|1|BA|U|271|||C
4V4T|1|BA|G|271
4V4T|1|BA|G|272
4V4T|1|BA|G|273
4V4T|1|BA|G|273|||A
4V4T|1|BA|C|273|||B
4V4T|1|BA|C|273|||C
4V4T|1|BA|C|273|||D
4V4T|1|BA|U|273|||E
*
4V4T|1|BA|A|363|||A
4V4T|1|BA|G|363|||B
4V4T|1|BA|G|363|||C
4V4T|1|BA|G|363|||D
4V4T|1|BA|U|363|||E
4V4T|1|BA|A|363|||F
4V4T|1|BA|C|364
4V4T|1|BA|C|365
4V4T|1|BA|C|366
4V4T|1|BA|G|370
4V4T|1|BA|A|371
4V4T|1|BA|G|372
4V4T|1|BA|U|373
4V4T|1|BA|A|374
4V4T|1|BA|C|375
*
4V4T|1|BA|G|399
4V4T|1|BA|G|400
4V4T|1|BA|A|401
4V4T|1|BA|A|402
4V4T|1|BA|U|403
4V4T|1|BA|C|404
4V4T|1|BA|U|405
4V4T|1|BA|G|406
*
4V4T|1|BA|U|421
4V4T|1|BA|A|422
4V4T|1|BA|A|423
4V4T|1|BA|G|424

Current chains

Chain BA: 23S ribosomal RNA

Nearby chains

Chain B4: 50S ribosomal protein L31
Chain BI: 50S ribosomal protein L9

J5_4V4T_008