J5_4V4X_005

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

CAAGGGUU*GUUAG*CU*ACCCGUACCGCAAAC*GUG

Length

33 nucleotides

Bulged bases

4V4X|1|BA|U|1341, 4V4X|1|BA|C|1607, 4V4X|1|BA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4X|1|BA|C|1306
4V4X|1|BA|A|1307
4V4X|1|BA|A|1308
4V4X|1|BA|G|1309
4V4X|1|BA|G|1310
4V4X|1|BA|G|1311
4V4X|1|BA|U|1312
4V4X|1|BA|U|1313
*
4V4X|1|BA|G|1339
4V4X|1|BA|U|1340
4V4X|1|BA|U|1341
4V4X|1|BA|A|1342
4V4X|1|BA|G|1343
*
4V4X|1|BA|C|1404
4V4X|1|BA|U|1405
*
4V4X|1|BA|A|1597
4V4X|1|BA|C|1598
4V4X|1|BA|C|1599
4V4X|1|BA|C|1600
4V4X|1|BA|G|1601
4V4X|1|BA|U|1602
4V4X|1|BA|A|1603
4V4X|1|BA|C|1604
4V4X|1|BA|C|1605
4V4X|1|BA|G|1606
4V4X|1|BA|C|1607
4V4X|1|BA|A|1608
4V4X|1|BA|A|1609
4V4X|1|BA|A|1610
4V4X|1|BA|C|1611
*
4V4X|1|BA|G|1620
4V4X|1|BA|U|1621
4V4X|1|BA|G|1622

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L34

Chain BW

50S ribosomal protein L23