J5_4V4X_007

3D structure

PDB id

4V4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.

Experimental method

X-RAY DIFFRACTION

Resolution

5 Å

Loop

Sequence

AAAAGACC*GGAUAACAGG*CACCUCGAUGUC*GGUUCAG*CGGUCU

Length

43 nucleotides

Bulged bases

4V4X|1|BA|A|2062, 4V4X|1|BA|A|2448, 4V4X|1|BA|U|2449, 4V4X|1|BA|C|2498, 4V4X|1|BA|G|2505, 4V4X|1|BA|A|2587, 4V4X|1|BA|U|2609, 4V4X|1|BA|C|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4X|1|BA|A|2057
4V4X|1|BA|A|2058
4V4X|1|BA|A|2059
4V4X|1|BA|A|2060
4V4X|1|BA|G|2061
4V4X|1|BA|A|2062
4V4X|1|BA|C|2063
4V4X|1|BA|C|2064
*
4V4X|1|BA|G|2446
4V4X|1|BA|G|2447
4V4X|1|BA|A|2448
4V4X|1|BA|U|2449
4V4X|1|BA|A|2450
4V4X|1|BA|A|2451
4V4X|1|BA|C|2452
4V4X|1|BA|A|2453
4V4X|1|BA|G|2454
4V4X|1|BA|G|2455
*
4V4X|1|BA|C|2496
4V4X|1|BA|A|2497
4V4X|1|BA|C|2498
4V4X|1|BA|C|2499
4V4X|1|BA|U|2500
4V4X|1|BA|C|2501
4V4X|1|BA|G|2502
4V4X|1|BA|A|2503
4V4X|1|BA|U|2504
4V4X|1|BA|G|2505
4V4X|1|BA|U|2506
4V4X|1|BA|C|2507
*
4V4X|1|BA|G|2582
4V4X|1|BA|G|2583
4V4X|1|BA|U|2584
4V4X|1|BA|U|2585
4V4X|1|BA|C|2586
4V4X|1|BA|A|2587
4V4X|1|BA|G|2588
*
4V4X|1|BA|C|2606
4V4X|1|BA|G|2607
4V4X|1|BA|G|2608
4V4X|1|BA|U|2609
4V4X|1|BA|C|2610
4V4X|1|BA|U|2611

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AC

Transfer RNA; tRNA

Chain B4

50S ribosomal protein L32

Chain BD

50S ribosomal protein L2

Chain BE

50S ribosomal protein L3

Chain BF

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15

Chain BP

50S ribosomal protein L16

Chain BZ

50S ribosomal protein L27