J5_4V4Y_004

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

CGACUC*GGAC*GUUC*GCGU*AGUGCGAAUG

Length

28 nucleotides

Bulged bases

4V4Y|1|BA|U|811, 4V4Y|1|BA|G|1248, 4V4Y|1|BA|G|1252, 4V4Y|1|BA|A|1253, 4V4Y|1|BA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Y|1|BA|C|584
4V4Y|1|BA|G|585
4V4Y|1|BA|A|586
4V4Y|1|BA|C|587
4V4Y|1|BA|U|588
4V4Y|1|BA|C|589
*
4V4Y|1|BA|G|668
4V4Y|1|BA|G|669
4V4Y|1|BA|A|670
4V4Y|1|BA|C|671
*
4V4Y|1|BA|G|809
4V4Y|1|BA|U|810
4V4Y|1|BA|U|811
4V4Y|1|BA|C|812
*
4V4Y|1|BA|G|1195
4V4Y|1|BA|C|1196
4V4Y|1|BA|G|1197
4V4Y|1|BA|U|1198
*
4V4Y|1|BA|A|1247
4V4Y|1|BA|G|1248
4V4Y|1|BA|U|1249
4V4Y|1|BA|G|1250
4V4Y|1|BA|C|1251
4V4Y|1|BA|G|1252
4V4Y|1|BA|A|1253
4V4Y|1|BA|A|1254
4V4Y|1|BA|U|1255
4V4Y|1|BA|G|1256

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L35

Chain BF

50S ribosomal protein L4

Chain BO

50S ribosomal protein L15

Chain BT

50S ribosomal protein L20

Chain BU

50S ribosomal protein L21