J5_4V4Z_003

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CCUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAGG

Length

35 nucleotides

Bulged bases

4V4Z|1|BA|A|270|||B, 4V4Z|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Z|1|BA|C|267
4V4Z|1|BA|C|268
4V4Z|1|BA|U|269
4V4Z|1|BA|A|270
4V4Z|1|BA|A|270|||A
4V4Z|1|BA|A|270|||B
4V4Z|1|BA|C|270|||C
*
4V4Z|1|BA|G|270|||W
4V4Z|1|BA|G|270|||X
4V4Z|1|BA|G|270|||Y
4V4Z|1|BA|U|270|||Z
4V4Z|1|BA|C|271|||A
4V4Z|1|BA|G|271|||B
4V4Z|1|BA|U|271|||C
4V4Z|1|BA|G|271
*
4V4Z|1|BA|C|366
4V4Z|1|BA|G|370
4V4Z|1|BA|A|371
4V4Z|1|BA|G|372
4V4Z|1|BA|U|373
4V4Z|1|BA|A|374
4V4Z|1|BA|C|375
*
4V4Z|1|BA|G|399
4V4Z|1|BA|G|400
4V4Z|1|BA|A|401
4V4Z|1|BA|A|402
4V4Z|1|BA|U|403
4V4Z|1|BA|C|404
4V4Z|1|BA|U|405
4V4Z|1|BA|G|406
*
4V4Z|1|BA|U|421
4V4Z|1|BA|A|422
4V4Z|1|BA|A|423
4V4Z|1|BA|G|424
4V4Z|1|BA|G|425

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B3

50S RIBOSOMAL PROTEIN L31

Chain BK

50S RIBOSOMAL PROTEIN L9