J5_4V4Z_004

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGACUC*GGAC*GUUC*GCGU*AGUGCGAAUG

Length

28 nucleotides

Bulged bases

4V4Z|1|BA|G|669, 4V4Z|1|BA|U|811, 4V4Z|1|BA|G|1248, 4V4Z|1|BA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Z|1|BA|C|584
4V4Z|1|BA|G|585
4V4Z|1|BA|A|586
4V4Z|1|BA|C|587
4V4Z|1|BA|U|588
4V4Z|1|BA|C|589
*
4V4Z|1|BA|G|668
4V4Z|1|BA|G|669
4V4Z|1|BA|A|670
4V4Z|1|BA|C|671
*
4V4Z|1|BA|G|809
4V4Z|1|BA|U|810
4V4Z|1|BA|U|811
4V4Z|1|BA|C|812
*
4V4Z|1|BA|G|1195
4V4Z|1|BA|C|1196
4V4Z|1|BA|G|1197
4V4Z|1|BA|U|1198
*
4V4Z|1|BA|A|1247
4V4Z|1|BA|G|1248
4V4Z|1|BA|U|1249
4V4Z|1|BA|G|1250
4V4Z|1|BA|C|1251
4V4Z|1|BA|G|1252
4V4Z|1|BA|A|1253
4V4Z|1|BA|A|1254
4V4Z|1|BA|U|1255
4V4Z|1|BA|G|1256

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S RIBOSOMAL PROTEIN L35

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BO

50S RIBOSOMAL PROTEIN L15

Chain BT

50S RIBOSOMAL PROTEIN L20

Chain BU

50S RIBOSOMAL PROTEIN L21