J5_4V4Z_005

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GGAACUCUGCAAGUUGGC*GUG*CC*GUGAACAGG*CGCUGUC

Length

39 nucleotides

Bulged bases

4V4Z|1|BA|C|1672, 4V4Z|1|BA|G|1758, 4V4Z|1|BA|G|1763, 4V4Z|1|BA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Z|1|BA|G|1666
4V4Z|1|BA|G|1667
4V4Z|1|BA|A|1668
4V4Z|1|BA|A|1669
4V4Z|1|BA|C|1670
4V4Z|1|BA|U|1671
4V4Z|1|BA|C|1672
4V4Z|1|BA|U|1673
4V4Z|1|BA|G|1674
4V4Z|1|BA|C|1675
4V4Z|1|BA|A|1676
4V4Z|1|BA|A|1677
4V4Z|1|BA|G|1678
4V4Z|1|BA|U|1679
4V4Z|1|BA|U|1680
4V4Z|1|BA|G|1681
4V4Z|1|BA|G|1682
4V4Z|1|BA|C|1683
*
4V4Z|1|BA|G|1705
4V4Z|1|BA|U|1706
4V4Z|1|BA|G|1707
*
4V4Z|1|BA|C|1751
4V4Z|1|BA|C|1752
*
4V4Z|1|BA|G|1756
4V4Z|1|BA|U|1757
4V4Z|1|BA|G|1758
4V4Z|1|BA|A|1759
4V4Z|1|BA|A|1760
4V4Z|1|BA|C|1761
4V4Z|1|BA|A|1762
4V4Z|1|BA|G|1763
4V4Z|1|BA|G|1764
*
4V4Z|1|BA|C|1988
4V4Z|1|BA|G|1989
4V4Z|1|BA|C|1990
4V4Z|1|BA|U|1991
4V4Z|1|BA|G|1992
4V4Z|1|BA|U|1993
4V4Z|1|BA|C|1994

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BN

50S RIBOSOMAL PROTEIN L14

Chain BS

50S RIBOSOMAL PROTEIN L19