J5_4V4Z_006

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

AAAAGACC*GGAUAACAGG*CACCUCGAUGUC*GGUUCAG*CGGUCU

Length

43 nucleotides

Bulged bases

4V4Z|1|BA|A|2062, 4V4Z|1|BA|A|2448, 4V4Z|1|BA|U|2449, 4V4Z|1|BA|G|2505, 4V4Z|1|BA|U|2609, 4V4Z|1|BA|C|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4Z|1|BA|A|2057
4V4Z|1|BA|A|2058
4V4Z|1|BA|A|2059
4V4Z|1|BA|A|2060
4V4Z|1|BA|G|2061
4V4Z|1|BA|A|2062
4V4Z|1|BA|C|2063
4V4Z|1|BA|C|2064
*
4V4Z|1|BA|G|2446
4V4Z|1|BA|G|2447
4V4Z|1|BA|A|2448
4V4Z|1|BA|U|2449
4V4Z|1|BA|A|2450
4V4Z|1|BA|A|2451
4V4Z|1|BA|C|2452
4V4Z|1|BA|A|2453
4V4Z|1|BA|G|2454
4V4Z|1|BA|G|2455
*
4V4Z|1|BA|C|2496
4V4Z|1|BA|A|2497
4V4Z|1|BA|C|2498
4V4Z|1|BA|C|2499
4V4Z|1|BA|U|2500
4V4Z|1|BA|C|2501
4V4Z|1|BA|G|2502
4V4Z|1|BA|A|2503
4V4Z|1|BA|U|2504
4V4Z|1|BA|G|2505
4V4Z|1|BA|U|2506
4V4Z|1|BA|C|2507
*
4V4Z|1|BA|G|2582
4V4Z|1|BA|G|2583
4V4Z|1|BA|U|2584
4V4Z|1|BA|U|2585
4V4Z|1|BA|C|2586
4V4Z|1|BA|A|2587
4V4Z|1|BA|G|2588
*
4V4Z|1|BA|C|2606
4V4Z|1|BA|G|2607
4V4Z|1|BA|G|2608
4V4Z|1|BA|U|2609
4V4Z|1|BA|C|2610
4V4Z|1|BA|U|2611

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AC

Transfer RNA; tRNA

Chain B4

50S RIBOSOMAL PROTEIN L32

Chain BD

50S RIBOSOMAL PROTEIN L2

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BO

50S RIBOSOMAL PROTEIN L15

Chain BP

50S RIBOSOMAL PROTEIN L16

Chain BZ

50S RIBOSOMAL PROTEIN L27