J5_4V50_013

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V50|1|DB|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V50_013 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0642

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V50|1|DB|C|47
4V50|1|DB|G|48
4V50|1|DB|A|49
4V50|1|DB|U|50
4V50|1|DB|G|51
4V50|1|DB|A|52
4V50|1|DB|A|53
4V50|1|DB|G|54
*
4V50|1|DB|C|116
4V50|1|DB|G|117
4V50|1|DB|A|118
4V50|1|DB|A|119
4V50|1|DB|U|120
4V50|1|DB|G|121
*
4V50|1|DB|C|130
4V50|1|DB|A|131
*
4V50|1|DB|U|148
4V50|1|DB|A|149
4V50|1|DB|U|150
*
4V50|1|DB|A|176
4V50|1|DB|G|177
4V50|1|DB|G|178

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L34