J5_4V51_002

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGCAAG*CGGACGGG*CAG*CAC*GGCAGCA

Length

27 nucleotides

Bulged bases

4V51|1|AA|A|109, 4V51|1|AA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V51|1|AA|U|56
4V51|1|AA|G|57
4V51|1|AA|C|58
4V51|1|AA|A|59
4V51|1|AA|A|60
4V51|1|AA|G|61
*
4V51|1|AA|C|106
4V51|1|AA|G|107
4V51|1|AA|G|108
4V51|1|AA|A|109
4V51|1|AA|C|110
4V51|1|AA|G|111
4V51|1|AA|G|112
4V51|1|AA|G|113
*
4V51|1|AA|C|314
4V51|1|AA|A|315
4V51|1|AA|G|316
*
4V51|1|AA|C|337
4V51|1|AA|A|338
4V51|1|AA|C|339
*
4V51|1|AA|G|350
4V51|1|AA|G|351
4V51|1|AA|C|352
4V51|1|AA|A|353
4V51|1|AA|G|354
4V51|1|AA|C|355
4V51|1|AA|A|356

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AT

30S RIBOSOMAL PROTEIN S20

Chain BO

50S RIBOSOMAL PROTEIN L14

Chain BT

50S RIBOSOMAL PROTEIN L19

Chain DI

50S RIBOSOMAL PROTEIN L9