J5_4V51_020

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAAC*GGGUCGG*CGAGUAC*GGAAUCUG*UAAG

Length

32 nucleotides

Bulged bases

4V51|1|BA|C|271|||Z, 4V51|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V51|1|BA|C|268
4V51|1|BA|U|269
4V51|1|BA|A|270
4V51|1|BA|A|271
4V51|1|BA|A|271|||A
4V51|1|BA|C|271|||B
*
4V51|1|BA|G|271|||V
4V51|1|BA|G|271|||W
4V51|1|BA|G|271|||X
4V51|1|BA|U|271|||Y
4V51|1|BA|C|271|||Z
4V51|1|BA|G|272
4V51|1|BA|G|272|||B
*
4V51|1|BA|C|366
4V51|1|BA|G|370
4V51|1|BA|A|371
4V51|1|BA|G|372
4V51|1|BA|U|373
4V51|1|BA|A|374
4V51|1|BA|C|375
*
4V51|1|BA|G|399
4V51|1|BA|G|400
4V51|1|BA|A|401
4V51|1|BA|A|402
4V51|1|BA|U|403
4V51|1|BA|C|404
4V51|1|BA|U|405
4V51|1|BA|G|406
*
4V51|1|BA|U|421
4V51|1|BA|A|422
4V51|1|BA|A|423
4V51|1|BA|G|424

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BI

50S RIBOSOMAL PROTEIN L9