J5_4V53_017
3D structure
- PDB id
- 4V53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC
- Length
- 35 nucleotides
- Bulged bases
- 4V53|1|DB|A|2062, 4V53|1|DB|A|2448, 4V53|1|DB|U|2449, 4V53|1|DB|U|2585, 4V53|1|DB|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V53|1|DB|G|2057
4V53|1|DB|A|2058
4V53|1|DB|A|2059
4V53|1|DB|A|2060
4V53|1|DB|G|2061
4V53|1|DB|A|2062
4V53|1|DB|C|2063
4V53|1|DB|C|2064
*
4V53|1|DB|G|2446
4V53|1|DB|G|2447
4V53|1|DB|A|2448
4V53|1|DB|U|2449
4V53|1|DB|A|2450
4V53|1|DB|A|2451
4V53|1|DB|C|2452
4V53|1|DB|A|2453
*
4V53|1|DB|U|2500
4V53|1|DB|C|2501
4V53|1|DB|G|2502
4V53|1|DB|A|2503
4V53|1|DB|U|2504
4V53|1|DB|G|2505
4V53|1|DB|U|2506
*
4V53|1|DB|G|2583
4V53|1|DB|U|2584
4V53|1|DB|U|2585
4V53|1|DB|U|2586
4V53|1|DB|A|2587
4V53|1|DB|G|2588
*
4V53|1|DB|C|2606
4V53|1|DB|G|2607
4V53|1|DB|G|2608
4V53|1|DB|U|2609
4V53|1|DB|C|2610
4V53|1|DB|C|2611
Current chains
- Chain DB
- 23S rRNA
Nearby chains
- Chain D0
- 50S ribosomal protein L32
- Chain DC
- 50S ribosomal protein L2
- Chain DD
- 50S ribosomal protein L3
- Chain DE
- 50S ribosomal protein L4
- Chain DL
- 50S ribosomal protein L15
- Chain DM
- 50S ribosomal protein L16
- Chain DS
- 50S ribosomal protein L22
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