J5_4V54_002

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V54_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0812

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V54|1|AA|C|36
4V54|1|AA|U|37
4V54|1|AA|G|38
4V54|1|AA|G|39
*
4V54|1|AA|C|403
4V54|1|AA|G|404
4V54|1|AA|U|405
4V54|1|AA|G|406
*
4V54|1|AA|C|436
4V54|1|AA|U|437
4V54|1|AA|U|438
4V54|1|AA|U|439
4V54|1|AA|C|440
4V54|1|AA|A|441
4V54|1|AA|G|442
*
4V54|1|AA|C|492
4V54|1|AA|A|493
4V54|1|AA|G|494
4V54|1|AA|A|495
4V54|1|AA|A|496
4V54|1|AA|G|497
4V54|1|AA|A|498
4V54|1|AA|A|499
4V54|1|AA|G|500
*
4V54|1|AA|C|545
4V54|1|AA|A|546
4V54|1|AA|A|547
4V54|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12