J5_4V57_002

3D structure

PDB id

4V57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V57_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.1327

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V57|1|AA|C|36
4V57|1|AA|U|37
4V57|1|AA|G|38
4V57|1|AA|G|39
*
4V57|1|AA|C|403
4V57|1|AA|G|404
4V57|1|AA|U|405
4V57|1|AA|G|406
*
4V57|1|AA|C|436
4V57|1|AA|U|437
4V57|1|AA|U|438
4V57|1|AA|U|439
4V57|1|AA|C|440
4V57|1|AA|A|441
4V57|1|AA|G|442
*
4V57|1|AA|C|492
4V57|1|AA|A|493
4V57|1|AA|G|494
4V57|1|AA|A|495
4V57|1|AA|A|496
4V57|1|AA|G|497
4V57|1|AA|A|498
4V57|1|AA|A|499
4V57|1|AA|G|500
*
4V57|1|AA|C|545
4V57|1|AA|A|546
4V57|1|AA|A|547
4V57|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12