J5_4V5D_004

3D structure

PDB id

4V5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAAC*GGGUCGG*CGAGUAC*GGAAUCUG*UAAG

Length

32 nucleotides

Bulged bases

4V5D|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5D|1|BA|C|268
4V5D|1|BA|U|269
4V5D|1|BA|A|270
4V5D|1|BA|A|271
4V5D|1|BA|A|271|||A
4V5D|1|BA|C|271|||B
*
4V5D|1|BA|G|271|||V
4V5D|1|BA|G|271|||W
4V5D|1|BA|G|271|||X
4V5D|1|BA|U|271|||Y
4V5D|1|BA|C|271|||Z
4V5D|1|BA|G|272
4V5D|1|BA|G|272|||B
*
4V5D|1|BA|C|366
4V5D|1|BA|G|370
4V5D|1|BA|A|371
4V5D|1|BA|G|372
4V5D|1|BA|U|373
4V5D|1|BA|A|374
4V5D|1|BA|C|375
*
4V5D|1|BA|G|399
4V5D|1|BA|G|400
4V5D|1|BA|A|401
4V5D|1|BA|A|402
4V5D|1|BA|U|403
4V5D|1|BA|C|404
4V5D|1|BA|U|405
4V5D|1|BA|G|406
*
4V5D|1|BA|U|421
4V5D|1|BA|A|422
4V5D|1|BA|A|423
4V5D|1|BA|G|424

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BI

50S RIBOSOMAL PROTEIN L9