J5_4V5E_002

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CAUGCAAG*CGGACGGG*CAG*CAC*GGCAGCAG

Length

30 nucleotides

Bulged bases

4V5E|1|AA|A|109

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5E|1|AA|C|54
4V5E|1|AA|A|55
4V5E|1|AA|U|56
4V5E|1|AA|G|57
4V5E|1|AA|C|58
4V5E|1|AA|A|59
4V5E|1|AA|A|60
4V5E|1|AA|G|61
*
4V5E|1|AA|C|106
4V5E|1|AA|G|107
4V5E|1|AA|G|108
4V5E|1|AA|A|109
4V5E|1|AA|C|110
4V5E|1|AA|G|111
4V5E|1|AA|G|112
4V5E|1|AA|G|113
*
4V5E|1|AA|C|314
4V5E|1|AA|A|315
4V5E|1|AA|G|316
*
4V5E|1|AA|C|337
4V5E|1|AA|A|338
4V5E|1|AA|C|339
*
4V5E|1|AA|G|350
4V5E|1|AA|G|351
4V5E|1|AA|C|352
4V5E|1|AA|A|353
4V5E|1|AA|G|354
4V5E|1|AA|C|355
4V5E|1|AA|A|356
4V5E|1|AA|G|357

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AT

30S RIBOSOMAL PROTEIN S20

Chain BO

50S RIBOSOMAL PROTEIN L14

Chain BT

50S RIBOSOMAL PROTEIN L19

Chain DI

50S RIBOSOMAL PROTEIN L9