J5_4V5E_004

3D structure

PDB id

4V5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Insights into translational termination from the structure of RF2 bound to the ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

CUAAAC*GGGUCGG*CGAGUAC*GGAAUCUG*UAAG

Length

32 nucleotides

Bulged bases

4V5E|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5E|1|BA|C|268
4V5E|1|BA|U|269
4V5E|1|BA|A|270
4V5E|1|BA|A|271
4V5E|1|BA|A|271|||A
4V5E|1|BA|C|271|||B
*
4V5E|1|BA|G|271|||V
4V5E|1|BA|G|271|||W
4V5E|1|BA|G|271|||X
4V5E|1|BA|U|271|||Y
4V5E|1|BA|C|271|||Z
4V5E|1|BA|G|272
4V5E|1|BA|G|272|||B
*
4V5E|1|BA|C|366
4V5E|1|BA|G|370
4V5E|1|BA|A|371
4V5E|1|BA|G|372
4V5E|1|BA|U|373
4V5E|1|BA|A|374
4V5E|1|BA|C|375
*
4V5E|1|BA|G|399
4V5E|1|BA|G|400
4V5E|1|BA|A|401
4V5E|1|BA|A|402
4V5E|1|BA|U|403
4V5E|1|BA|C|404
4V5E|1|BA|U|405
4V5E|1|BA|G|406
*
4V5E|1|BA|U|421
4V5E|1|BA|A|422
4V5E|1|BA|A|423
4V5E|1|BA|G|424

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BI

50S RIBOSOMAL PROTEIN L9