J5_4V5F_004

3D structure

PDB id

4V5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the ribosome with elongation factor G trapped in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAAACC*GGGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

35 nucleotides

Bulged bases

4V5F|1|BA|U|272|||A, 4V5F|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5F|1|BA|C|268
4V5F|1|BA|U|269
4V5F|1|BA|A|270
4V5F|1|BA|A|271
4V5F|1|BA|A|271|||A
4V5F|1|BA|C|271|||B
4V5F|1|BA|C|271|||C
*
4V5F|1|BA|G|271|||U
4V5F|1|BA|G|271|||V
4V5F|1|BA|G|271|||W
4V5F|1|BA|G|271|||X
4V5F|1|BA|U|271|||Y
4V5F|1|BA|C|271|||Z
4V5F|1|BA|G|272
4V5F|1|BA|U|272|||A
4V5F|1|BA|G|272|||B
*
4V5F|1|BA|C|366
4V5F|1|BA|G|370
4V5F|1|BA|A|371
4V5F|1|BA|G|372
4V5F|1|BA|U|373
4V5F|1|BA|A|374
4V5F|1|BA|C|375
*
4V5F|1|BA|G|399
4V5F|1|BA|G|400
4V5F|1|BA|A|401
4V5F|1|BA|A|402
4V5F|1|BA|U|403
4V5F|1|BA|C|404
4V5F|1|BA|U|405
4V5F|1|BA|G|406
*
4V5F|1|BA|U|421
4V5F|1|BA|A|422
4V5F|1|BA|A|423
4V5F|1|BA|G|424

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28