J5_4V5G_014

3D structure

PDB id

4V5G (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 70S ribosome bound to EF-Tu and tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGACUC*GGAC*GUUC*GCGU*AGUGCGAAUG

Length

28 nucleotides

Bulged bases

4V5G|1|DA|U|811, 4V5G|1|DA|G|1248, 4V5G|1|DA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5G|1|DA|C|584
4V5G|1|DA|G|585
4V5G|1|DA|A|586
4V5G|1|DA|C|587
4V5G|1|DA|U|588
4V5G|1|DA|C|589
*
4V5G|1|DA|G|668
4V5G|1|DA|G|669
4V5G|1|DA|A|670
4V5G|1|DA|C|671
*
4V5G|1|DA|G|809
4V5G|1|DA|U|810
4V5G|1|DA|U|811
4V5G|1|DA|C|812
*
4V5G|1|DA|G|1195
4V5G|1|DA|C|1196
4V5G|1|DA|G|1197
4V5G|1|DA|U|1198
*
4V5G|1|DA|A|1247
4V5G|1|DA|G|1248
4V5G|1|DA|U|1249
4V5G|1|DA|G|1250
4V5G|1|DA|C|1251
4V5G|1|DA|G|1252
4V5G|1|DA|A|1253
4V5G|1|DA|A|1254
4V5G|1|DA|U|1255
4V5G|1|DA|G|1256

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D8

50S RIBOSOMAL PROTEIN L35

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DP

50S RIBOSOMAL PROTEIN L15

Chain DU

50S RIBOSOMAL PROTEIN L20

Chain DV

50S RIBOSOMAL PROTEIN L21