J5_4V5J_004

3D structure

PDB id

4V5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V5J|1|BA|U|272|||A, 4V5J|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5J|1|BA|C|268
4V5J|1|BA|U|269
4V5J|1|BA|A|270
4V5J|1|BA|A|271
4V5J|1|BA|A|271|||A
4V5J|1|BA|C|271|||B
*
4V5J|1|BA|G|271|||V
4V5J|1|BA|G|271|||W
4V5J|1|BA|G|271|||X
4V5J|1|BA|U|271|||Y
4V5J|1|BA|C|271|||Z
4V5J|1|BA|G|272
4V5J|1|BA|U|272|||A
4V5J|1|BA|G|272|||B
*
4V5J|1|BA|C|366
4V5J|1|BA|G|370
4V5J|1|BA|A|371
4V5J|1|BA|G|372
4V5J|1|BA|U|373
4V5J|1|BA|A|374
4V5J|1|BA|C|375
*
4V5J|1|BA|G|399
4V5J|1|BA|G|400
4V5J|1|BA|A|401
4V5J|1|BA|A|402
4V5J|1|BA|U|403
4V5J|1|BA|C|404
4V5J|1|BA|U|405
4V5J|1|BA|G|406
*
4V5J|1|BA|U|421
4V5J|1|BA|A|422
4V5J|1|BA|A|423
4V5J|1|BA|G|424

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28

Chain BI

50S RIBOSOMAL PROTEIN L9