J5_4V5K_017
3D structure
- PDB id
- 4V5K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU
- Length
- 37 nucleotides
- Bulged bases
- 4V5K|1|DA|A|2062, 4V5K|1|DA|A|2448, 4V5K|1|DA|U|2449, 4V5K|1|DA|U|2506, 4V5K|1|DA|U|2585, 4V5K|1|DA|U|2609
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V5K|1|DA|A|2057
4V5K|1|DA|A|2058
4V5K|1|DA|A|2059
4V5K|1|DA|A|2060
4V5K|1|DA|G|2061
4V5K|1|DA|A|2062
4V5K|1|DA|C|2063
4V5K|1|DA|C|2064
*
4V5K|1|DA|G|2446
4V5K|1|DA|G|2447
4V5K|1|DA|A|2448
4V5K|1|DA|U|2449
4V5K|1|DA|A|2450
4V5K|1|DA|A|2451
4V5K|1|DA|C|2452
4V5K|1|DA|A|2453
*
4V5K|1|DA|U|2500
4V5K|1|DA|C|2501
4V5K|1|DA|G|2502
4V5K|1|DA|A|2503
4V5K|1|DA|U|2504
4V5K|1|DA|G|2505
4V5K|1|DA|U|2506
4V5K|1|DA|C|2507
*
4V5K|1|DA|G|2582
4V5K|1|DA|G|2583
4V5K|1|DA|U|2584
4V5K|1|DA|U|2585
4V5K|1|DA|C|2586
4V5K|1|DA|A|2587
4V5K|1|DA|G|2588
*
4V5K|1|DA|C|2606
4V5K|1|DA|G|2607
4V5K|1|DA|G|2608
4V5K|1|DA|U|2609
4V5K|1|DA|C|2610
4V5K|1|DA|U|2611
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain CV
- Transfer RNA; tRNA
- Chain D0
- 50S RIBOSOMAL PROTEIN L27
- Chain D5
- 50S RIBOSOMAL PROTEIN L32
- Chain DD
- 50S RIBOSOMAL PROTEIN L2
- Chain DE
- 50S RIBOSOMAL PROTEIN L3
- Chain DF
- 50S RIBOSOMAL PROTEIN L4
- Chain DP
- 50S RIBOSOMAL PROTEIN L15
- Chain DQ
- 50S RIBOSOMAL PROTEIN L16
- Chain DW
- 50S RIBOSOMAL PROTEIN L22
Coloring options: