J5_4V5L_004

3D structure

PDB id

4V5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V5L|1|BA|U|272|||A, 4V5L|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5L|1|BA|C|268
4V5L|1|BA|U|269
4V5L|1|BA|A|270
4V5L|1|BA|A|271
4V5L|1|BA|A|271|||A
4V5L|1|BA|C|271|||B
*
4V5L|1|BA|G|271|||V
4V5L|1|BA|G|271|||W
4V5L|1|BA|G|271|||X
4V5L|1|BA|U|271|||Y
4V5L|1|BA|C|271|||Z
4V5L|1|BA|G|272
4V5L|1|BA|U|272|||A
4V5L|1|BA|G|272|||B
*
4V5L|1|BA|C|366
4V5L|1|BA|G|370
4V5L|1|BA|A|371
4V5L|1|BA|G|372
4V5L|1|BA|U|373
4V5L|1|BA|A|374
4V5L|1|BA|C|375
*
4V5L|1|BA|G|399
4V5L|1|BA|G|400
4V5L|1|BA|A|401
4V5L|1|BA|A|402
4V5L|1|BA|U|403
4V5L|1|BA|C|404
4V5L|1|BA|U|405
4V5L|1|BA|G|406
*
4V5L|1|BA|U|421
4V5L|1|BA|A|422
4V5L|1|BA|A|423
4V5L|1|BA|G|424

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28