J5_4V5P_004

3D structure

PDB id

4V5P (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V5P|1|BA|U|272|||A, 4V5P|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5P|1|BA|C|268
4V5P|1|BA|U|269
4V5P|1|BA|A|270
4V5P|1|BA|A|271
4V5P|1|BA|A|271|||A
4V5P|1|BA|C|271|||B
*
4V5P|1|BA|G|271|||V
4V5P|1|BA|G|271|||W
4V5P|1|BA|G|271|||X
4V5P|1|BA|U|271|||Y
4V5P|1|BA|C|271|||Z
4V5P|1|BA|G|272
4V5P|1|BA|U|272|||A
4V5P|1|BA|G|272|||B
*
4V5P|1|BA|C|366
4V5P|1|BA|G|370
4V5P|1|BA|A|371
4V5P|1|BA|G|372
4V5P|1|BA|U|373
4V5P|1|BA|A|374
4V5P|1|BA|C|375
*
4V5P|1|BA|G|399
4V5P|1|BA|G|400
4V5P|1|BA|A|401
4V5P|1|BA|A|402
4V5P|1|BA|U|403
4V5P|1|BA|C|404
4V5P|1|BA|U|405
4V5P|1|BA|G|406
*
4V5P|1|BA|U|421
4V5P|1|BA|A|422
4V5P|1|BA|A|423
4V5P|1|BA|G|424

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B1

50S RIBOSOMAL PROTEIN L28