J5_4V5Q_002

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CACUC*GAGGCAG

Length

27 nucleotides

Bulged bases

4V5Q|1|AA|A|109, 4V5Q|1|AA|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5Q|1|AA|C|58
4V5Q|1|AA|A|59
4V5Q|1|AA|A|60
4V5Q|1|AA|G|61
*
4V5Q|1|AA|C|106
4V5Q|1|AA|G|107
4V5Q|1|AA|G|108
4V5Q|1|AA|A|109
4V5Q|1|AA|C|110
4V5Q|1|AA|G|111
4V5Q|1|AA|G|112
4V5Q|1|AA|G|113
*
4V5Q|1|AA|C|314
4V5Q|1|AA|A|315
4V5Q|1|AA|G|316
*
4V5Q|1|AA|C|337
4V5Q|1|AA|A|338
4V5Q|1|AA|C|339
4V5Q|1|AA|U|340
4V5Q|1|AA|C|341
*
4V5Q|1|AA|G|348
4V5Q|1|AA|A|349
4V5Q|1|AA|G|350
4V5Q|1|AA|G|351
4V5Q|1|AA|C|352
4V5Q|1|AA|A|353
4V5Q|1|AA|G|354

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AT

30S RIBOSOMAL PROTEIN S20

Chain BO

50S RIBOSOMAL PROTEIN L14

Chain BT

50S RIBOSOMAL PROTEIN L19