J5_4V5Q_010

3D structure

PDB id

4V5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUGGA*UCCUGAAC*GGUAAUAG*CGAG

Length

30 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5Q|1|CA|C|36
4V5Q|1|CA|U|37
4V5Q|1|CA|G|38
4V5Q|1|CA|G|39
*
4V5Q|1|CA|C|403
4V5Q|1|CA|U|404
4V5Q|1|CA|U|405
4V5Q|1|CA|G|406
4V5Q|1|CA|G|407
4V5Q|1|CA|A|408
*
4V5Q|1|CA|U|434
4V5Q|1|CA|C|435
4V5Q|1|CA|C|436
4V5Q|1|CA|U|437
4V5Q|1|CA|G|438
4V5Q|1|CA|A|439
4V5Q|1|CA|A|441
4V5Q|1|CA|C|442
*
4V5Q|1|CA|G|492
4V5Q|1|CA|G|493
4V5Q|1|CA|U|494
4V5Q|1|CA|A|495
4V5Q|1|CA|A|496
4V5Q|1|CA|U|498
4V5Q|1|CA|A|499
4V5Q|1|CA|G|500
*
4V5Q|1|CA|C|545
4V5Q|1|CA|G|546
4V5Q|1|CA|A|547
4V5Q|1|CA|G|548

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CD

30S RIBOSOMAL PROTEIN S4

Chain CL

30S RIBOSOMAL PROTEIN S12

Chain CZ

ELONGATION FACTOR TU