J5_4V5S_008

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACUCUGCAAGUUGG*UG*CC*GUGAACAGG*CGCUGU

Length

33 nucleotides

Bulged bases

4V5S|1|BA|G|1758, 4V5S|1|BA|G|1763, 4V5S|1|BA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5S|1|BA|A|1669
4V5S|1|BA|C|1670
4V5S|1|BA|U|1671
4V5S|1|BA|C|1672
4V5S|1|BA|U|1673
4V5S|1|BA|G|1674
4V5S|1|BA|C|1675
4V5S|1|BA|A|1676
4V5S|1|BA|A|1677
4V5S|1|BA|G|1678
4V5S|1|BA|U|1679
4V5S|1|BA|U|1680
4V5S|1|BA|G|1681
4V5S|1|BA|G|1682
*
4V5S|1|BA|U|1706
4V5S|1|BA|G|1707
*
4V5S|1|BA|C|1751
4V5S|1|BA|C|1752
*
4V5S|1|BA|G|1756
4V5S|1|BA|U|1757
4V5S|1|BA|G|1758
4V5S|1|BA|A|1759
4V5S|1|BA|A|1760
4V5S|1|BA|C|1761
4V5S|1|BA|A|1762
4V5S|1|BA|G|1763
4V5S|1|BA|G|1764
*
4V5S|1|BA|C|1988
4V5S|1|BA|G|1989
4V5S|1|BA|C|1990
4V5S|1|BA|U|1991
4V5S|1|BA|G|1992
4V5S|1|BA|U|1993

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BO

50S RIBOSOMAL PROTEIN L14

Chain BT

50S RIBOSOMAL PROTEIN L19