J5_4V5S_014

3D structure

PDB id

4V5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V5S|1|DA|C|271|||Z, 4V5S|1|DA|U|272|||A, 4V5S|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V5S|1|DA|C|268
4V5S|1|DA|U|269
4V5S|1|DA|A|270
4V5S|1|DA|A|271
4V5S|1|DA|A|271|||A
4V5S|1|DA|C|271|||B
*
4V5S|1|DA|G|271|||V
4V5S|1|DA|G|271|||W
4V5S|1|DA|G|271|||X
4V5S|1|DA|U|271|||Y
4V5S|1|DA|C|271|||Z
4V5S|1|DA|G|272
4V5S|1|DA|U|272|||A
4V5S|1|DA|G|272|||B
*
4V5S|1|DA|C|366
4V5S|1|DA|G|370
4V5S|1|DA|A|371
4V5S|1|DA|G|372
4V5S|1|DA|U|373
4V5S|1|DA|A|374
4V5S|1|DA|C|375
*
4V5S|1|DA|G|399
4V5S|1|DA|G|400
4V5S|1|DA|A|401
4V5S|1|DA|A|402
4V5S|1|DA|U|403
4V5S|1|DA|C|404
4V5S|1|DA|U|405
4V5S|1|DA|G|406
*
4V5S|1|DA|U|421
4V5S|1|DA|A|422
4V5S|1|DA|A|423
4V5S|1|DA|G|424

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain D1

50S RIBOSOMAL PROTEIN L28