J5_4V5Y_002

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5Y_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0877

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V5Y|1|AA|C|36
4V5Y|1|AA|U|37
4V5Y|1|AA|G|38
4V5Y|1|AA|G|39
*
4V5Y|1|AA|C|403
4V5Y|1|AA|G|404
4V5Y|1|AA|U|405
4V5Y|1|AA|G|406
*
4V5Y|1|AA|C|436
4V5Y|1|AA|U|437
4V5Y|1|AA|U|438
4V5Y|1|AA|U|439
4V5Y|1|AA|C|440
4V5Y|1|AA|A|441
4V5Y|1|AA|G|442
*
4V5Y|1|AA|C|492
4V5Y|1|AA|A|493
4V5Y|1|AA|G|494
4V5Y|1|AA|A|495
4V5Y|1|AA|A|496
4V5Y|1|AA|G|497
4V5Y|1|AA|A|498
4V5Y|1|AA|A|499
4V5Y|1|AA|G|500
*
4V5Y|1|AA|C|545
4V5Y|1|AA|A|546
4V5Y|1|AA|A|547
4V5Y|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12