J5_4V5Y_004

3D structure

PDB id

4V5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with paromomycin and ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

4.45 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4V5Y|1|BB|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V5Y_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0799

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V5Y|1|BB|C|47
4V5Y|1|BB|G|48
4V5Y|1|BB|A|49
4V5Y|1|BB|U|50
4V5Y|1|BB|G|51
4V5Y|1|BB|A|52
4V5Y|1|BB|A|53
4V5Y|1|BB|G|54
*
4V5Y|1|BB|C|116
4V5Y|1|BB|G|117
4V5Y|1|BB|A|118
4V5Y|1|BB|A|119
4V5Y|1|BB|U|120
4V5Y|1|BB|G|121
*
4V5Y|1|BB|C|130
4V5Y|1|BB|A|131
*
4V5Y|1|BB|U|148
4V5Y|1|BB|A|149
4V5Y|1|BB|U|150
*
4V5Y|1|BB|A|176
4V5Y|1|BB|G|177
4V5Y|1|BB|G|178

Current chains

Chain BB

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34