J5_4V63_013

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V63|1|DA|U|271|||D, 4V63|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V63|1|DA|C|268
4V63|1|DA|U|269
4V63|1|DA|A|270|||A
4V63|1|DA|A|270|||B
4V63|1|DA|A|270|||C
4V63|1|DA|C|270|||D
*
4V63|1|DA|G|270|||X
4V63|1|DA|G|270|||Y
4V63|1|DA|G|270|||Z
4V63|1|DA|U|271|||A
4V63|1|DA|C|271|||B
4V63|1|DA|G|271|||C
4V63|1|DA|U|271|||D
4V63|1|DA|G|271
*
4V63|1|DA|C|366|||B
4V63|1|DA|G|370
4V63|1|DA|A|371
4V63|1|DA|G|372
4V63|1|DA|U|373
4V63|1|DA|A|374
4V63|1|DA|C|375
*
4V63|1|DA|G|399
4V63|1|DA|G|400
4V63|1|DA|A|401
4V63|1|DA|A|402
4V63|1|DA|U|403
4V63|1|DA|C|404
4V63|1|DA|U|405
4V63|1|DA|G|406
*
4V63|1|DA|U|421
4V63|1|DA|A|422
4V63|1|DA|A|423
4V63|1|DA|G|424

Current chains

Chain DA

23S RRNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DI

50S ribosomal protein L9