J5_4V63_017

3D structure

PDB id

4V63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for translation termination on the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

4V63|1|DA|A|2062, 4V63|1|DA|A|2448, 4V63|1|DA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V63|1|DA|A|2057
4V63|1|DA|A|2058
4V63|1|DA|A|2059
4V63|1|DA|A|2060
4V63|1|DA|G|2061
4V63|1|DA|A|2062
4V63|1|DA|C|2063
4V63|1|DA|C|2064
*
4V63|1|DA|G|2446
4V63|1|DA|G|2447
4V63|1|DA|A|2448
4V63|1|DA|U|2449
4V63|1|DA|A|2450
4V63|1|DA|A|2451
4V63|1|DA|C|2452
4V63|1|DA|A|2453
*
4V63|1|DA|U|2500
4V63|1|DA|C|2501
4V63|1|DA|G|2502
4V63|1|DA|A|2503
4V63|1|DA|U|2504
4V63|1|DA|G|2505
4V63|1|DA|U|2506
4V63|1|DA|C|2507
*
4V63|1|DA|G|2582
4V63|1|DA|G|2583
4V63|1|DA|U|2584
4V63|1|DA|U|2585
4V63|1|DA|C|2586
4V63|1|DA|A|2587
4V63|1|DA|G|2588
*
4V63|1|DA|C|2606
4V63|1|DA|G|2607
4V63|1|DA|G|2608
4V63|1|DA|U|2609
4V63|1|DA|C|2610
4V63|1|DA|U|2611

Current chains

Chain DA

23S RRNA

Nearby chains

Chain CX

Peptide chain release factor 1

Chain CY

Transfer RNA; tRNA

Chain D5

50S ribosomal protein L32

Chain DD

50S ribosomal protein L2

Chain DE

50S ribosomal protein L3

Chain DF

50S ribosomal protein L4

Chain DW

50S ribosomal protein L22