J5_4V64_011

3D structure

PDB id

4V64 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with hygromycin B.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V64_011 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0933

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V64|1|CA|C|36
4V64|1|CA|U|37
4V64|1|CA|G|38
4V64|1|CA|G|39
*
4V64|1|CA|C|403
4V64|1|CA|G|404
4V64|1|CA|U|405
4V64|1|CA|G|406
*
4V64|1|CA|C|436
4V64|1|CA|U|437
4V64|1|CA|U|438
4V64|1|CA|U|439
4V64|1|CA|C|440
4V64|1|CA|A|441
4V64|1|CA|G|442
*
4V64|1|CA|C|492
4V64|1|CA|A|493
4V64|1|CA|G|494
4V64|1|CA|A|495
4V64|1|CA|A|496
4V64|1|CA|G|497
4V64|1|CA|A|498
4V64|1|CA|A|499
4V64|1|CA|G|500
*
4V64|1|CA|C|545
4V64|1|CA|A|546
4V64|1|CA|A|547
4V64|1|CA|G|548

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA

Chain BH

50S ribosomal protein L9

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12