J5_4V6A_001

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGG*CUUG*CUGAACC*GGGUAAUAG*CGAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6A_001 not in the Motif Atlas

Homologous match to J5_6CZR_007

Geometric discrepancy: 0.1151

The information below is about J5_6CZR_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6A|1|AA|C|36
4V6A|1|AA|U|37
4V6A|1|AA|G|38
4V6A|1|AA|G|39
*
4V6A|1|AA|C|403
4V6A|1|AA|U|404
4V6A|1|AA|U|405
4V6A|1|AA|G|406
*
4V6A|1|AA|C|436
4V6A|1|AA|U|437
4V6A|1|AA|G|438
4V6A|1|AA|A|439
4V6A|1|AA|A|441
4V6A|1|AA|C|442
4V6A|1|AA|C|443
*
4V6A|1|AA|G|491
4V6A|1|AA|G|492
4V6A|1|AA|G|493
4V6A|1|AA|U|494
4V6A|1|AA|A|495
4V6A|1|AA|A|496
4V6A|1|AA|U|498
4V6A|1|AA|A|499
4V6A|1|AA|G|500
*
4V6A|1|AA|C|545
4V6A|1|AA|G|546
4V6A|1|AA|A|547
4V6A|1|AA|G|548

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12