J5_4V6A_013

3D structure

PDB id

4V6A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of EF-P bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V6A|1|DA|C|271|||Z, 4V6A|1|DA|U|272|||A, 4V6A|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6A|1|DA|C|268
4V6A|1|DA|U|269
4V6A|1|DA|A|270
4V6A|1|DA|A|271
4V6A|1|DA|A|271|||A
4V6A|1|DA|C|271|||B
*
4V6A|1|DA|G|271|||V
4V6A|1|DA|G|271|||W
4V6A|1|DA|G|271|||X
4V6A|1|DA|U|271|||Y
4V6A|1|DA|C|271|||Z
4V6A|1|DA|G|272
4V6A|1|DA|U|272|||A
4V6A|1|DA|G|272|||B
*
4V6A|1|DA|C|366
4V6A|1|DA|G|370
4V6A|1|DA|A|371
4V6A|1|DA|G|372
4V6A|1|DA|U|373
4V6A|1|DA|A|374
4V6A|1|DA|C|375
*
4V6A|1|DA|G|399
4V6A|1|DA|G|400
4V6A|1|DA|A|401
4V6A|1|DA|A|402
4V6A|1|DA|U|403
4V6A|1|DA|C|404
4V6A|1|DA|U|405
4V6A|1|DA|G|406
*
4V6A|1|DA|U|421
4V6A|1|DA|A|422
4V6A|1|DA|A|423
4V6A|1|DA|G|424

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L28

Chain DI

50S ribosomal protein L9