J5_4V6C_010

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6C_010 not in the Motif Atlas

Homologous match to J5_5J7L_001

Geometric discrepancy: 0.0631

The information below is about J5_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_92941.1

Basepair signature

cWW-F-cHW-F-tSS-F-cWW-cWW-F-F-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V6C|1|CA|C|36
4V6C|1|CA|U|37
4V6C|1|CA|G|38
4V6C|1|CA|G|39
*
4V6C|1|CA|C|403
4V6C|1|CA|G|404
4V6C|1|CA|U|405
4V6C|1|CA|G|406
*
4V6C|1|CA|C|436
4V6C|1|CA|U|437
4V6C|1|CA|U|438
4V6C|1|CA|U|439
4V6C|1|CA|C|440
*
4V6C|1|CA|G|497
4V6C|1|CA|A|498
4V6C|1|CA|A|499
4V6C|1|CA|G|500
*
4V6C|1|CA|C|545
4V6C|1|CA|A|546
4V6C|1|CA|A|547
4V6C|1|CA|G|548

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12