J5_4V6D_017

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC

Length

37 nucleotides

Bulged bases

4V6D|1|DA|A|2062, 4V6D|1|DA|A|2448, 4V6D|1|DA|U|2585, 4V6D|1|DA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6D|1|DA|G|2057
4V6D|1|DA|A|2058
4V6D|1|DA|A|2059
4V6D|1|DA|A|2060
4V6D|1|DA|G|2061
4V6D|1|DA|A|2062
4V6D|1|DA|C|2063
4V6D|1|DA|C|2064
*
4V6D|1|DA|G|2446
4V6D|1|DA|G|2447
4V6D|1|DA|A|2448
4V6D|1|DA|U|2449
4V6D|1|DA|A|2450
4V6D|1|DA|A|2451
4V6D|1|DA|C|2452
4V6D|1|DA|A|2453
*
4V6D|1|DA|U|2500
4V6D|1|DA|C|2501
4V6D|1|DA|G|2502
4V6D|1|DA|A|2503
4V6D|1|DA|U|2504
4V6D|1|DA|G|2505
4V6D|1|DA|U|2506
4V6D|1|DA|C|2507
*
4V6D|1|DA|G|2582
4V6D|1|DA|G|2583
4V6D|1|DA|U|2584
4V6D|1|DA|U|2585
4V6D|1|DA|U|2586
4V6D|1|DA|A|2587
4V6D|1|DA|G|2588
*
4V6D|1|DA|C|2606
4V6D|1|DA|G|2607
4V6D|1|DA|G|2608
4V6D|1|DA|U|2609
4V6D|1|DA|C|2610
4V6D|1|DA|C|2611

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DC

50S ribosomal protein L2

Chain DD

50S ribosomal protein L3

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15

Chain DS

50S ribosomal protein L22