J5_4V6E_002

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V6E_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.07

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V6E|1|AA|C|36
4V6E|1|AA|U|37
4V6E|1|AA|G|38
4V6E|1|AA|G|39
*
4V6E|1|AA|C|403
4V6E|1|AA|G|404
4V6E|1|AA|U|405
4V6E|1|AA|G|406
*
4V6E|1|AA|C|436
4V6E|1|AA|U|437
4V6E|1|AA|U|438
4V6E|1|AA|U|439
4V6E|1|AA|C|440
4V6E|1|AA|A|441
4V6E|1|AA|G|442
*
4V6E|1|AA|C|492
4V6E|1|AA|A|493
4V6E|1|AA|G|494
4V6E|1|AA|A|495
4V6E|1|AA|A|496
4V6E|1|AA|G|497
4V6E|1|AA|A|498
4V6E|1|AA|A|499
4V6E|1|AA|G|500
*
4V6E|1|AA|C|545
4V6E|1|AA|A|546
4V6E|1|AA|A|547
4V6E|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12