J5_4V6E_012
3D structure
- PDB id
- 4V6E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.71 Å
Loop
- Sequence
- CAAGU*GCGGACGGG*CAC*GAC*GGCAG
- Length
- 25 nucleotides
- Bulged bases
- 4V6E|1|CA|A|60, 4V6E|1|CA|A|109, 4V6E|1|CA|C|352, 4V6E|1|CA|A|353
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4V6E_012 not in the Motif Atlas
- Homologous match to J5_6CZR_008
- Geometric discrepancy: 0.2187
- The information below is about J5_6CZR_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6E|1|CA|C|58
4V6E|1|CA|A|59
4V6E|1|CA|A|60
4V6E|1|CA|G|61
4V6E|1|CA|U|62
*
4V6E|1|CA|G|105
4V6E|1|CA|C|106
4V6E|1|CA|G|107
4V6E|1|CA|G|108
4V6E|1|CA|A|109
4V6E|1|CA|C|110
4V6E|1|CA|G|111
4V6E|1|CA|G|112
4V6E|1|CA|G|113
*
4V6E|1|CA|C|314
4V6E|1|CA|A|315
4V6E|1|CA|C|316
*
4V6E|1|CA|G|337
4V6E|1|CA|A|338
4V6E|1|CA|C|339
*
4V6E|1|CA|G|350
4V6E|1|CA|G|351
4V6E|1|CA|C|352
4V6E|1|CA|A|353
4V6E|1|CA|G|354
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain CP
- 30S ribosomal protein S16
- Chain CT
- 30S ribosomal protein S20
- Chain DK
- 50S ribosomal protein L14
- Chain DP
- 50S ribosomal protein L19
Coloring options: