J5_4V6E_015

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

CGACUU*AGACC*GGUUC*GC*GCGAAUG

Length

25 nucleotides

Bulged bases

4V6E|1|DA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6E|1|DA|C|584
4V6E|1|DA|G|585
4V6E|1|DA|A|586
4V6E|1|DA|C|587
4V6E|1|DA|U|588
4V6E|1|DA|U|589
*
4V6E|1|DA|A|668
4V6E|1|DA|G|669
4V6E|1|DA|A|670
4V6E|1|DA|C|671
4V6E|1|DA|C|672
*
4V6E|1|DA|G|808
4V6E|1|DA|G|809
4V6E|1|DA|U|810
4V6E|1|DA|U|811
4V6E|1|DA|C|812
*
4V6E|1|DA|G|1195
4V6E|1|DA|C|1196
*
4V6E|1|DA|G|1250
4V6E|1|DA|C|1251
4V6E|1|DA|G|1252
4V6E|1|DA|A|1253
4V6E|1|DA|A|1254
4V6E|1|DA|U|1255
4V6E|1|DA|G|1256

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15

Chain DQ

50S ribosomal protein L20

Chain DR

50S ribosomal protein L21