J5_4V6G_012

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAAC*GGGUCGUG*CGAGUAC*GGAAUCUG*UAAG

Length

33 nucleotides

Bulged bases

4V6G|1|DA|U|271|||C, 4V6G|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6G|1|DA|C|268
4V6G|1|DA|U|269
4V6G|1|DA|A|270
4V6G|1|DA|A|270|||A
4V6G|1|DA|A|270|||B
4V6G|1|DA|C|270|||C
*
4V6G|1|DA|G|270|||W
4V6G|1|DA|G|270|||X
4V6G|1|DA|G|270|||Y
4V6G|1|DA|U|270|||Z
4V6G|1|DA|C|271|||A
4V6G|1|DA|G|271|||B
4V6G|1|DA|U|271|||C
4V6G|1|DA|G|271
*
4V6G|1|DA|C|366
4V6G|1|DA|G|370
4V6G|1|DA|A|371
4V6G|1|DA|G|372
4V6G|1|DA|U|373
4V6G|1|DA|A|374
4V6G|1|DA|C|375
*
4V6G|1|DA|G|399
4V6G|1|DA|G|400
4V6G|1|DA|A|401
4V6G|1|DA|A|402
4V6G|1|DA|U|403
4V6G|1|DA|C|404
4V6G|1|DA|U|405
4V6G|1|DA|G|406
*
4V6G|1|DA|U|421
4V6G|1|DA|A|422
4V6G|1|DA|A|423
4V6G|1|DA|G|424

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DK

50S ribosomal protein L9

Chain DZ

50S ribosomal protein L28