J5_4V6G_016

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU

Length

37 nucleotides

Bulged bases

4V6G|1|DA|A|2062, 4V6G|1|DA|A|2448, 4V6G|1|DA|U|2506, 4V6G|1|DA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6G|1|DA|A|2057
4V6G|1|DA|A|2058
4V6G|1|DA|A|2059
4V6G|1|DA|A|2060
4V6G|1|DA|G|2061
4V6G|1|DA|A|2062
4V6G|1|DA|C|2063
4V6G|1|DA|C|2064
*
4V6G|1|DA|G|2446
4V6G|1|DA|G|2447
4V6G|1|DA|A|2448
4V6G|1|DA|U|2449
4V6G|1|DA|A|2450
4V6G|1|DA|A|2451
4V6G|1|DA|C|2452
4V6G|1|DA|A|2453
*
4V6G|1|DA|U|2500
4V6G|1|DA|C|2501
4V6G|1|DA|G|2502
4V6G|1|DA|A|2503
4V6G|1|DA|U|2504
4V6G|1|DA|G|2505
4V6G|1|DA|U|2506
4V6G|1|DA|C|2507
*
4V6G|1|DA|G|2582
4V6G|1|DA|G|2583
4V6G|1|DA|U|2584
4V6G|1|DA|U|2585
4V6G|1|DA|C|2586
4V6G|1|DA|A|2587
4V6G|1|DA|G|2588
*
4V6G|1|DA|C|2606
4V6G|1|DA|G|2607
4V6G|1|DA|G|2608
4V6G|1|DA|U|2609
4V6G|1|DA|C|2610
4V6G|1|DA|U|2611

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain D5

50S ribosomal protein L32

Chain DD

50S ribosomal protein L2

Chain DE

50S ribosomal protein L3

Chain DF

50S ribosomal protein L4

Chain DS

50S ribosomal protein L22