J5_4V7K_002

3D structure

PDB id

4V7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAAAC*GGGUCGG*CGAGUAC*GGAAUCUG*UAAG

Length

32 nucleotides

Bulged bases

4V7K|1|AA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7K|1|AA|C|268
4V7K|1|AA|U|269
4V7K|1|AA|A|270
4V7K|1|AA|A|271
4V7K|1|AA|A|271|||A
4V7K|1|AA|C|271|||B
*
4V7K|1|AA|G|271|||V
4V7K|1|AA|G|271|||W
4V7K|1|AA|G|271|||X
4V7K|1|AA|U|271|||Y
4V7K|1|AA|C|271|||Z
4V7K|1|AA|G|272
4V7K|1|AA|G|272|||B
*
4V7K|1|AA|C|366
4V7K|1|AA|G|370
4V7K|1|AA|A|371
4V7K|1|AA|G|372
4V7K|1|AA|U|373
4V7K|1|AA|A|374
4V7K|1|AA|C|375
*
4V7K|1|AA|G|399
4V7K|1|AA|G|400
4V7K|1|AA|A|401
4V7K|1|AA|A|402
4V7K|1|AA|U|403
4V7K|1|AA|C|404
4V7K|1|AA|U|405
4V7K|1|AA|G|406
*
4V7K|1|AA|U|421
4V7K|1|AA|A|422
4V7K|1|AA|A|423
4V7K|1|AA|G|424

Current chains

Chain AA

RNA (2848-MER)

Nearby chains

Chain A1

50S ribosomal protein L28

Chain AI

50S ribosomal protein L9