J5_4V7L_008

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGG*CUUG*CUGAACC*GGGUAAUAG*CGAG

Length

28 nucleotides

Bulged bases

4V7L|1|CA|C|442

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7L_008 not in the Motif Atlas

Homologous match to J5_6CZR_007

Geometric discrepancy: 0.1245

The information below is about J5_6CZR_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7L|1|CA|C|36
4V7L|1|CA|U|37
4V7L|1|CA|G|38
4V7L|1|CA|G|39
*
4V7L|1|CA|C|403
4V7L|1|CA|U|404
4V7L|1|CA|U|405
4V7L|1|CA|G|406
*
4V7L|1|CA|C|436
4V7L|1|CA|U|437
4V7L|1|CA|G|438
4V7L|1|CA|A|439
4V7L|1|CA|A|441
4V7L|1|CA|C|442
4V7L|1|CA|C|443
*
4V7L|1|CA|G|491
4V7L|1|CA|G|492
4V7L|1|CA|G|493
4V7L|1|CA|U|494
4V7L|1|CA|A|495
4V7L|1|CA|A|496
4V7L|1|CA|U|498
4V7L|1|CA|A|499
4V7L|1|CA|G|500
*
4V7L|1|CA|C|545
4V7L|1|CA|G|546
4V7L|1|CA|A|547
4V7L|1|CA|G|548

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4

Chain CL

30S ribosomal protein S12