J5_4V7L_010

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

4V7L|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4V7L_010 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.1156

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V7L|1|DA|C|47
4V7L|1|DA|G|48
4V7L|1|DA|A|49
4V7L|1|DA|U|50
4V7L|1|DA|G|51
4V7L|1|DA|A|52
4V7L|1|DA|A|53
4V7L|1|DA|G|54
*
4V7L|1|DA|C|116
4V7L|1|DA|G|117
4V7L|1|DA|A|118
4V7L|1|DA|A|119
4V7L|1|DA|U|120
4V7L|1|DA|G|121
*
4V7L|1|DA|C|130
4V7L|1|DA|G|131
*
4V7L|1|DA|C|148
4V7L|1|DA|A|149
4V7L|1|DA|C|150
*
4V7L|1|DA|G|176
4V7L|1|DA|G|177
4V7L|1|DA|G|178

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DX

50S ribosomal protein L23